PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G105400.1
Common NamePOPTR_0011s10670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 299aa    MW: 32284.3 Da    PI: 6.4019
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G105400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C  ++  lC +C ++ H        H+++pl
  Potri.011G105400.1  4 QCNVCEAAEAKVLCCADEAALCWTCDEKVHAAnklaskHQRIPL 47
                        7******99*********************66889999998886 PP
2zf-B_box279.1e-095390237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                        +++kC+ ++e    +fC +++ llC++C +++H    H
  Potri.011G105400.1 53 QMPKCDICQETAGFFFCLEDRALLCRKCDVAIHTAntH 90
                        799*******98999******************65453 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
CDDcd000215.87E-6347No hitNo description
SMARTSM003367.4E-11447IPR000315B-box-type zinc finger
SuperFamilySSF578457.32E-54594No hitNo description
SMARTSM003363.9E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.665299IPR000315B-box-type zinc finger
PfamPF006433.2E-65390IPR000315B-box-type zinc finger
CDDcd000213.34E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWTCDE KVHAANKLAS KHQRIPLSTS SPQMPKCDIC  60
QETAGFFFCL EDRALLCRKC DVAIHTANTH VSVHQRFLLT GVKVGLEPTD PGASSSSGKS  120
PSGEKKTLET KSRPVSRRGT LLPLANPCNQ VSTVNVCGVG DFGPAKLPYS GGSATSSISQ  180
WHIDEFLDLP EFNQNYGYID NGSSKADSGK RGDSDCSAIL RSTEEEVDDE ECLGQVPDSS  240
RAVPQIPSPP TASGLYWPKS FHNHSETAIF VPDICCSVVQ NCHYSEQRGT VSKRQRQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.68990.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G105400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827000.0AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316844.10.0B-box zinc finger protein 22 isoform X1
SwissprotQ9SYM21e-101BBX22_ARATH; B-box zinc finger protein 22
TrEMBLB9I1Q40.0B9I1Q4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-97light-regulated zinc finger protein 1