PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G106800.1
Common NamePOPTR_0011s10810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 320aa    MW: 34211.3 Da    PI: 8.1512
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G106800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822211.32.5e-6521441149
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         ++++r ptwkErEnnkrRERrRRaiaaki++GLR++Gn+klpk++DnneVlkALc+eAGw ve+DGttyrkg+kp e+++++g sa+asp+
  Potri.011G106800.1   2 TSGTRLPTWKERENNKRRERRRRAIAAKIFSGLRMYGNFKLPKHCDNNEVLKALCNEAGWAVEPDGTTYRKGCKPAEHMDIIGGSATASPC 92 
                         5899*************************************************************************************** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                         ss+         +sp++sy++sp sssfpsp+s++ + +a+   +sllp+l++ls++sss
  Potri.011G106800.1  93 SSYL--------PSPCASYNPSPGSSSFPSPVSSSYAANANLddNSLLPWLKNLSSASSS 144
                         **88........*******************9988776654466**********998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.8E-643139IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FSGLRMYGNF KLPKHCDNNE VLKALCNEAG  60
WAVEPDGTTY RKGCKPAEHM DIIGGSATAS PCSSYLPSPC ASYNPSPGSS SFPSPVSSSY  120
AANANLDDNS LLPWLKNLSS ASSSKLPHLY IHGGSISAPV TPPLSSPTAR TPRIKTGWED  180
QPIHPGWCGQ HYLPSSTPPS PGRQIVPDPG WFAGIRLPQG GPTSPTFSLV ASNPFGFKEE  240
ALAGGGSRMW TPGQSGTCSP AIAAGSDQTA DIPMAEVISD EFAFRCNATG LVKPWEGERI  300
HEECGSDDLE LTLGNSRTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.29470.0stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G106800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1454330.0EF145433.1 Populus trichocarpa clone WS01124_K11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317445.10.0BES1/BZR1 homolog protein 4
SwissprotQ9ZV881e-139BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLB9I1R50.0B9I1R5_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10810.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26613375
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-127BES1/BZR1 homolog 4