PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G125400.1
Common NamePOPTR_0011s12810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 246aa    MW: 26532.8 Da    PI: 5.6719
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G125400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.3e-08432635
            zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHk 35
                        C+++++  ++ fCe+++  lC dC ++ H+
  Potri.011G125400.1  4 CELCGSS-ARMFCESDEASLCWDCDEKVHS 32
                        *****99.*******************995 PP
2zf-B_box25.82.1e-0886116334
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeH 34 
                         ++ C+++++  ++ +Ce++q  lC dC ++ H
  Potri.011G125400.1  86 MKGCELCGSS-ARMYCESDQASLCWDCDEKVH 116
                         567*****99.******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.058145IPR000315B-box-type zinc finger
SMARTSM003364.5E-10145IPR000315B-box-type zinc finger
PfamPF006431.9E-6432IPR000315B-box-type zinc finger
CDDcd000219.50E-6445No hitNo description
PROSITE profilePS501199.32884130IPR000315B-box-type zinc finger
SMARTSM003364.3E-1384130IPR000315B-box-type zinc finger
PfamPF006432.1E-687117IPR000315B-box-type zinc finger
CDDcd000218.61E-689130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKGCELCGSS ARMFCESDEA SLCWDCDEKV HSANFLVAKH CRTLLCQVCQ SPTPWKASVS  60
KFAPTVSICE SCFTIPNKTK ETEERMKGCE LCGSSARMYC ESDQASLCWD CDEKVHTANF  120
LVAKHCRTLL CQVCQSPTPW KASGSKFAPT VSVVPWSGPT ASSSPSPVPP VASSSSEEET  180
SCAGRNGFLK RMRESNVDLD SDDEIGCSSS HNIGGRILSN DGGNSLSSMR PWKQARTSVN  240
VEEDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.1411e-152leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G125400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164490.0AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377787.21e-108B-box zinc finger protein 24
TrEMBLA0A3N7FF711e-106A0A3N7FF71_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12810.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2067634
Representative plantOGRP84523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.19e-15salt tolerance homolog2