PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G001400.3

Common Name

POPTR_0012s01610g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 260aa MW: 29609.5 Da PI: 9.4904

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G001400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.3e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Potri.012G001400.3 17 LPPGFRFHPTDEELISHYLYKKVLDINFSA-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 106 79************************99.89***********888999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Potri.012G001400.3 107 IYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-65	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	17	167	IPR003441	NAC domain
Pfam	PF02365	5.7E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MENISGLGKE DDDKMDLPPG FRFHPTDEEL ISHYLYKKVL DINFSARAIG DVDLNKSEPW 60 ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLEGKFSAHN LPKTAKNEWV ICRVFQKSSA GKKTYISGLV 180 RLGSFGNEFS PYGLPPLTDS SPSNGKIRPV AESAYVPCFS NLSDDQRNQQ DTTDSFNNHL 240 FAVSSNPSEV LFQFKTAQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	5	173	2	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	5	173	2	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	5	173	2	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	5	173	2	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-56	5	173	2	171	NAC domain-containing protein 19
4dul_B	1e-56	5	173	2	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G001400.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318383.2	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-135	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	B9I557	0.0	B9I557_POPTR; Uncharacterized protein
STRING	POPTR_0012s01610.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-137	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Potri.012G001400.3
Entrez Gene	7489822

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]