PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G013100.1
Common NamePOPTR_0012s02050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 156aa    MW: 18253.3 Da    PI: 10.5191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G013100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-1031794087
                        ETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3 40 desgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                        desg +W+++++ rkk+    vl+kGW  Fv+ ++Lk+gD v F  +++
  Potri.012G013100.1 31 DESGFVWTFQCSTRKKGHPkPVLAKGWLTFVRHKELKAGDRVKFFKVKD 79
                        899********765554447********************998864433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.122191IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-11480IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-9481No hitNo description
Gene3DG3DSA:2.40.330.102.4E-10694IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-73183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAKFSKLVTK TDIHKRLSMR SSHVRDFPEI DESGFVWTFQ CSTRKKGHPK PVLAKGWLTF  60
VRHKELKAGD RVKFFKVKDQ SDTATPFYRI EAEKEIKIFG CRHNFYFNMV LEASRNFNLV  120
SLFTFIQVFH LNFVVILTNS IVFLQFVKCF DGNFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G013100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025074.12e-54PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU5FWZ01e-110U5FWZ0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02050.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-06B3 family protein