PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G013200.1
Common NamePOPTR_0012s02060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 161aa    MW: 18658.7 Da    PI: 10.5725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G013200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.6e-1031794087
                        ETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3 40 desgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                        desg +W+++++ rkk++   vl+kGW  Fv+ ++Lk+gD v F  +++
  Potri.012G013200.1 31 DESGFVWTFQCSTRKKGNPkPVLAKGWLAFVRHKELKAGDRVKFFKVKD 79
                        899********887766667********************999864444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.404191IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-12489IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-10481No hitNo description
Gene3DG3DSA:2.40.330.101.2E-11695IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-73182IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAKFSKLVTK TDIHKRLSMR SSHVRDFPEI DESGFVWTFQ CSTRKKGNPK PVLAKGWLAF  60
VRHKELKAGD RVKFFKVKDQ SDTVTPFYRV EAEKKIKIFG IIFGYNNYGS KCRHNFEASR  120
NFNLVSLFTF IQVCHLNFVV ILTNSIVFLQ FVKCFDGNFN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G013200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025074.16e-57PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9PDD81e-114B9PDD8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02060.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778