PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G013400.1
Common NamePOPTR_0012s02070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 125aa    MW: 14143.5 Da    PI: 10.6808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G013400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-12590287
                        EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                         k lt+ d +  +rl+lp kf++     +g++ +  +    desg  W+++++ rkk+    vl+kGW  Fv+ ++Lk+gD v F  +++
  Potri.012G013400.1  5 SKLLTKTDIH--KRLSLPTKFFKPLpslKGSHVR--DFPAIDESGFGWTFQCSTRKKGHPkPVLSKGWLAFVRHKELKAGDRVKFFKEKD 90
                        5555444444..46********888977555555..68899***********765554447**********************9975554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.1642105IPR003340B3 DNA binding domain
CDDcd100172.05E-14492No hitNo description
Gene3DG3DSA:2.40.330.101.6E-15498IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00544101IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-13491IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-9690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAEFSKLLTK TDIHKRLSLP TKFFKPLPSL KGSHVRDFPA IDESGFGWTF QCSTRKKGHP  60
KPVLSKGWLA FVRHKELKAG DRVKFFKEKD QSGTATPFYR IEAEKEIKIF GVIFGYSPIV  120
APFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G013400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025074.11e-78PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9I5A22e-84B9I5A2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02070.14e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-08B3 family protein