PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G013500.1
Common NamePOPTR_0012s02080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 158aa    MW: 17376.6 Da    PI: 10.6461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G013500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-15494190
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.s 88
                        f k+l++ dv k  rl++p k++++    +g+  + ++ + +desg +W +k++ r+k+    vltkGW  Fv  ++Lk+gD v F+  ++  
  Potri.012G013500.1  4 FAKILSKTDVQK--RLSVPTKYLSSLpsfNGD--RAVEFQAMDESGCVWAFKCSTRRKRHPkPVLTKGWLAFVACKNLKAGDKVAFYKLKNkC 92
                        789997777776..59*******999*87555..7889***************774444336*************************555523 PP

                        EE CS
                  B3 89 ef 90
                        ++
  Potri.012G013500.1 93 RT 94
                        33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0372102IPR003340B3 DNA binding domain
PfamPF023621.1E-12496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-184102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-15499IPR015300DNA-binding pseudobarrel domain
CDDcd100177.86E-204100No hitNo description
SMARTSM010191.1E-64104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MENFAKILSK TDVQKRLSVP TKYLSSLPSF NGDRAVEFQA MDESGCVWAF KCSTRRKRHP  60
KPVLTKGWLA FVACKNLKAG DKVAFYKLKN KCRTATHVCK LRTVSACVQA AKTLSLLLLI  120
SGKAAVPFIA FPLLIKDASA AGYAFPFGHR CKNLIYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G013500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025075.12e-68PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A3N7FU958e-69A0A3N7FU95_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02080.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-08B3 family protein