PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G013700.1
Common NamePOPTR_0012s02100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 13672.2 Da    PI: 10.9053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G013700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.3e-15494190
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88
                        f k+l p d  k  rl++p k++++    +g     ++ +  d +g +W++k+++rkk++    vl+kGW  Fv +++Lk+gD v F++++++
  Potri.012G013700.1  4 FSKILRPTDIYK--RLSVPTKYLKSLpsfEGG--HAVDFQAVDDKGHVWTFKCSVRKKGRYpkPVLAKGWLPFVASKNLKAGDKVKFYREKNK 92
                        556665555554..69*******999977333..46789999***********99988887999************************88774 PP

                        EE CS
                  B3 89 ef 90
                        ++
  Potri.012G013700.1 93 SA 94
                        43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-20396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-15393IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-193103No hitNo description
SMARTSM010196.4E-104104IPR003340B3 DNA binding domain
PfamPF023622.2E-12594IPR003340B3 DNA binding domain
PROSITE profilePS508638.83916102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MASFSKILRP TDIYKRLSVP TKYLKSLPSF EGGHAVDFQA VDDKGHVWTF KCSVRKKGRY  60
PKPVLAKGWL PFVASKNLKA GDKVKFYREK NKSAAKRVYK VQVAKEVRIF GVIFGYAPIF  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G013700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318411.11e-82B3 domain-containing transcription factor NGA4
TrEMBLB9I5A63e-81B9I5A6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02100.14e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-10B3 family protein