PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G016800.1

Common Name

POPTR_0012s02390g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 250aa MW: 29131.4 Da PI: 6.1666

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G016800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.9	2.6e-25	141	188	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++++F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl Potri.012G016800.1 141 LELEEIQRHFNMPITQAAREMKVGLTVLKKRCRELRIMRWPHRKIKSL 188 899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.722	119	209	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-22	141	188	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MENPLDFYQA WVLDDQDIFN KISELPPLES LFEPLNLPPF VPYDKNFNGF KNNEVINNDN 60 IFSESNLDSW YNQENAIDTK PVINPSIHPS YCLNLDNNVI KSELLNEVSM MLVQSDCASS 120 SSMKEEEEVR KMSGRKRSVG LELEEIQRHF NMPITQAARE MKVGLTVLKK RCRELRIMRW 180 PHRKIKSLTS LINNVKEMGL SEYEAIMLEE HKRLIEELPD LELTERTKKL RQACFKANYK 240 KRRLSAAYS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G016800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318433.1	0.0	protein RKD4
TrEMBL	B9I1X3	0.0	B9I1X3_POPTR; Uncharacterized protein
STRING	POPTR_0012s02390.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-41	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Potri.012G016800.1
Entrez Gene	7496404