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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.012G020200.1 |
| Common Name | POPTR_0012s02710g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 436aa MW: 49432.5 Da PI: 7.4224 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G020200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 400.6 | 1.6e-122 | 38 | 434 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaal... 81
+++lL++cA+ +s++d ++a+++ + ls ++sp+gd+++Rl++ f +AL+ rl++++ +++ a ++ + +n +
Potri.012G020200.1 38 MRQLLVSCADLISQSDYSAAKRFFSILSSNSSPYGDSTERLVHQFIRALSLRLNGHGISTSTAPAAHVFNINNmvtsrpcG------Tndk 122
589****************************************************65555555555444444433444440......0455 PP
GRAS 82 ..............kl..fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspe 151
++ +++++P+++f+hltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g+
Potri.012G020200.1 123 mlisyeadqetlrsCYlsLNKITPFIRFCHLTANQAILEAIQvGQQAIHIIDFDIMHGVQWPPLMQALAERSnntlHPPPMLRITGTGH-- 211
555567777766652257***********************94669**************************777777***********.. PP
GRAS 152 sgskeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
+ + l++tg+rL kfA++lg++f+f++l ++l+ ++++ + p+EalaVn+v lhr+l+++ +L+ +k l+Pk
Potri.012G020200.1 212 --DLNVLHRTGDRLLKFAQSLGLRFHFHPLlllnnDPTSLAHYLPSAITLLPDEALAVNCVSYLHRFLKDDSREL---LLFLHKIKALNPK 297
..9**************************9775322235666689999********************6555444...59*********** PP
GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
vv+v+e+ea+hn++ Fl+rfleal++y+alfdslea+lp++s+er vE+ ++grei+++va+eg+ rrerh+++e+W+++l+++GF +vp
Potri.012G020200.1 298 VVTVAEREANHNHPLFLQRFLEALDHYTALFDSLEATLPPNSRERLAVEQIWFGREIMDIVAAEGEGRRERHQRFETWEMMLKSVGFIKVP 388
******************************************************************************************* PP
GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
ls +a +qaklllr ++ sdgy+++ ++s++lgW++++L+svS+W
Potri.012G020200.1 389 LSPFALSQAKLLLRLHYpSDGYQLQILNNSFFLGWRNHSLFSVSSW 434
********************************************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010014 | Biological Process | meristem initiation |
| GO:0010223 | Biological Process | secondary shoot formation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MLGSWSQLQT QSQLMSSSNS HDRHQEEETP GPPTAFHMRQ LLVSCADLIS QSDYSAAKRF 60
FSILSSNSSP YGDSTERLVH QFIRALSLRL NGHGISTSTA PAAHVFNINN MVTSRPCGTN 120
DKMLISYEAD QETLRSCYLS LNKITPFIRF CHLTANQAIL EAIQVGQQAI HIIDFDIMHG 180
VQWPPLMQAL AERSNNTLHP PPMLRITGTG HDLNVLHRTG DRLLKFAQSL GLRFHFHPLL 240
LLNNDPTSLA HYLPSAITLL PDEALAVNCV SYLHRFLKDD SRELLLFLHK IKALNPKVVT 300
VAEREANHNH PLFLQRFLEA LDHYTALFDS LEATLPPNSR ERLAVEQIWF GREIMDIVAA 360
EGEGRRERHQ RFETWEMMLK SVGFIKVPLS PFALSQAKLL LRLHYPSDGY QLQILNNSFF 420
LGWRNHSLFS VSSWN*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209044 | 0.0 | AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence. |
