PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G024100.1
Common NamePOPTR_0012s03120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 172aa    MW: 19168.4 Da    PI: 4.1894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G024100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM842.9e-26141362128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk.d 89 
                          +G+rF+P +++l+v+yLk+k+ g++l++ +vi+++d+y + P +Lp   +k++   ew+fFs+r+k        + a + gy +   +  
  Potri.012G024100.1  14 LAGYRFSPYNDDLIVYYLKRKILGQQLPA-DVITTTDVYASSPDKLPlDDFKGGVAnEWFFFSNRSKDDD-----TIALDGGYYEIDPEgA 98 
                         68***************************.99***************7666665444*******998754.....567899**99554426 PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++  +g++vg  ktL fy+g++p+g++t+W+++e+r+
  Potri.012G024100.1  99 GPITW-EGKVVGYVKTLNFYQGSSPNGTETEWMVEEFRV 136
                         88888.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-297162IPR003441NAC domain
PROSITE profilePS5100529.78713165IPR003441NAC domain
PfamPF023653.2E-1515136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASAGQALNV PVLLAGYRFS PYNDDLIVYY LKRKILGQQL PADVITTTDV YASSPDKLPL  60
DDFKGGVANE WFFFSNRSKD DDTIALDGGY YEIDPEGAGP ITWEGKVVGY VKTLNFYQGS  120
SPNGTETEWM VEEFRVNPEF LPVNNNDRST QEKIANLVAC KISRVQPEPE W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1941369140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G024100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091841e-156AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016104.11e-113PREDICTED: NAC domain-containing protein 86-like
TrEMBLB9I2381e-123B9I238_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03120.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-22NAC domain containing protein 86