PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G024200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 221aa    MW: 25249.1 Da    PI: 4.4837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G024200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.91.6e-26611841128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk. 88 
                         lp+G+rF+P++++l+v+yLk+k+ g++l++ +vi+++d+y + P +Lp   +k+ e +ew+fFs+r+k        + a + gy     + 
  Potri.012G024200.1  61 LPAGYRFSPNNDDLIVYYLKRKILGQQLPA-DVIPTTDVYASSPDKLPlDDFKGgEANEWFFFSNRSKDDD-----TIALDGGYYAIDPEg 145
                         799***************************.99***************7566662556*******998754.....567889999854442 PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++  +g+ vg  ktL fy+g+ p+g++t+W+++e+r+
  Potri.012G024200.1 146 AGPITW-EGKIVGYVKTLNFYQGSLPNGTETEWMVEEFRI 184
                         688888.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3152212IPR003441NAC domain
PROSITE profilePS5100531.24561214IPR003441NAC domain
PfamPF023651.4E-1562184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
FIYSYNSISR PHIYTTVPCT NHYFIDWYFS FSYYNYSSSL YIVSRNISMA SAGQALNRPT  60
LPAGYRFSPN NDDLIVYYLK RKILGQQLPA DVIPTTDVYA SSPDKLPLDD FKGGEANEWF  120
FFSNRSKDDD TIALDGGYYA IDPEGAGPIT WEGKIVGYVK TLNFYQGSLP NGTETEWMVE  180
EFRINPEFVP INNNDDRSTR EKIENLVACK ISRVQPEPEW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-19472111165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G024200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091840.0AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318469.11e-125NAC domain-containing protein 86 isoform X1
RefseqXP_024438638.11e-125NAC domain-containing protein 86 isoform X2
TrEMBLA0A3N7FW081e-123A0A3N7FW08_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03130.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-24NAC domain containing protein 86