PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G024200.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 168aa    MW: 19226.6 Da    PI: 4.5189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G024200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.73.4e-172513118128
                 NAM  18 yLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkgelvglkkt 105
                         y  +k+ g++l++ +vi+++d+y + P +Lp   +k+ e +ew+fFs+r+k        + a + gy     +   +++  +g+ vg  kt
  Potri.012G024200.2  25 YRLRKILGQQLPA-DVIPTTDVYASSPDKLPlDDFKGgEANEWFFFSNRSKDDD-----TIALDGGYYAIDPEgAGPITW-EGKIVGYVKT 108
                         77899********.99***************7566662556*******998754.....567889999854442688888.999******* PP

                 NAM 106 LvfykgrapkgektdWvmheyrl 128
                         L fy+g+ p+g++t+W+++e+r+
  Potri.012G024200.2 109 LNFYQGSLPNGTETEWMVEEFRI 131
                         *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2819161IPR003441NAC domain
SuperFamilySSF1019415.89E-2124159IPR003441NAC domain
PfamPF023657.5E-729131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
IYLLIQFNFP SPYIHYRAMH KSLLYRLRKI LGQQLPADVI PTTDVYASSP DKLPLDDFKG  60
GEANEWFFFS NRSKDDDTIA LDGGYYAIDP EGAGPITWEG KIVGYVKTLN FYQGSLPNGT  120
ETEWMVEEFR INPEFVPINN NDDRSTREKI ENLVACKISR VQPEPEW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G024200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091841e-159AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318469.11e-100NAC domain-containing protein 86 isoform X1
RefseqXP_024438638.11e-100NAC domain-containing protein 86 isoform X2
TrEMBLA0A3N7FW086e-99A0A3N7FW08_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03130.11e-100(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-15NAC domain containing protein 86