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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.012G040400.2 |
| Common Name | POPTR_0012s03750g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 257aa MW: 28253.5 Da PI: 10.1489 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G040400.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 277.4 | 6.8e-85 | 16 | 256 | 43 | 301 |
GAGA_bind 43 nlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekle 133
+ +++ ++ +++rd+ ++ +++ +a +++++k+ ++ + ++ + v ++t+s++++q+ ++++ + e+l
Potri.012G040400.2 16 AAIMTSMNGGFNHRDIGVSRHMFPMEHMRDASIDKREKFHHVFTGNHD-------YDVVFPETSSANHMQM-----FQPPNSA--NDETL- 91
333777888899999988777778888888899999999988886664.......67789***********.....3333332..34434. PP
GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224
++e a ++ke+ kk+qr+k k kakk k+ ++++k + +++ ++ k++kk++++ +ng+s+D+s +P+PvCsCtG+++qCY+
Potri.012G040400.2 92 -DQVEGAGVVEKENGPDKKKQRPKALKCLKAKKGKRGPQVPKPDGSPSA--QQGKSSKKTVEIMINGISMDISLFPIPVCSCTGTPQQCYR 179
.4566777888999999999****************9988877777766..679************************************* PP
GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
WG+GGWqSaCCtt iSv+PLP+s krrgaRiagrKmS gafkk+LekLa+eGyd+sn++DL++hWAkHGtnkfvti+
Potri.012G040400.2 180 WGCGGWQSACCTTCISVHPLPMSMKRRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNAIDLRTHWAKHGTNKFVTIK 256
****************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MAPTMPEKPF SGSRSAAIMT SMNGGFNHRD IGVSRHMFPM EHMRDASIDK REKFHHVFTG 60
NHDYDVVFPE TSSANHMQMF QPPNSANDET LDQVEGAGVV EKENGPDKKK QRPKALKCLK 120
AKKGKRGPQV PKPDGSPSAQ QGKSSKKTVE IMINGISMDI SLFPIPVCSC TGTPQQCYRW 180
GCGGWQSACC TTCISVHPLP MSMKRRGARI AGRKMSLGAF KKVLEKLAGE GYDFSNAIDL 240
RTHWAKHGTN KFVTIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982272 | 0.0 | FJ982272.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) gene, complete cds. |
| GenBank | FJ982273 | 0.0 | FJ982273.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) mRNA, complete cds. |
