PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G040900.1

Common Name

POPTR_0012s03770g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 183aa MW: 20662.9 Da PI: 6.8633

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G040900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.9	1.2e-28	9	59	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 YkeCl+NhAaslG++a+DGCgEf+ + +++ ++l+CaACgCHRnFHR+ + Potri.012G040900.1 9 LYKECLRNHAASLGSYATDGCGEFTLD---DTSLSTLQCAACGCHRNFHRKVSY 59 7***********************8...6789***************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.5E-24	9	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-18	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.972	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.5E-24	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	9.7E-29	99	165	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.57E-16	100	164	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.6E-31	106	164	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MESDSTNDLY KECLRNHAAS LGSYATDGCG EFTLDDTSLS TLQCAACGCH RNFHRKVSYS 60 NRRDHIMHSP SSETVVMEMM DYAEGNNERN SRPPVMVVES GERSGKKRFR TKFTAEQREK 120 MMEFAEKLGW KLQRKDEEDE VERFCEGIGV SRQVFKVWMH NHKNSSSTTS ASPGNASSLT 180 TQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-22	107	169	18	79	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G040900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318316.3	1e-136	zinc-finger homeodomain protein 9
Swissprot	Q9SB61	3e-42	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2K1Y8K4	1e-135	A0A2K1Y8K4_POPTR; Uncharacterized protein
STRING	POPTR_0012s03770.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-44	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Potri.012G040900.1
Entrez Gene	7485185

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]