PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G058200.2
Common NamePOPTR_0012s05470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 158aa    MW: 17418.7 Da    PI: 4.5241
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G058200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.22.1e-231193385
               NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                        ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +v+se+++ c re+++ti+++ +l al  lGf +y+e + +
  Potri.012G058200.2 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEDVYT 93
                        6899**************************************************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-368140IPR009072Histone-fold
SuperFamilySSF471132.26E-3212141IPR009072Histone-fold
PfamPF008082.9E-201479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLVSSESNE  60
VCSREDKRTI APEHVLKALQ VLGFGEYIED VYTAYEQHKL ETMHDSLKGG GKWSTGAAMT  120
EEEAAAAQQR MFDEARARMN GVVSAPKQPE ANQSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-301213612133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.94050.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G058200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317921.11e-115protein Dr1 homolog isoform X1
SwissprotP495921e-88NC2B_ARATH; Protein Dr1 homolog
TrEMBLB9I2N51e-113B9I2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05470.11e-114(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-83nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]