PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G058200.3
Common NamePOPTR_0012s05470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 128aa    MW: 14033.7 Da    PI: 4.5121
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G058200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.31.5e-1218634085
               NF-YB 40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                         efi +v+se+++ c re+++ti+++ +l al  lGf +y+e + +
  Potri.012G058200.3 18 KEFINLVSSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEDVYT 63
                        69***************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.48E-1818111IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-2018110IPR009072Histone-fold
PfamPF008083.4E-71849IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKEF INLVSSESNE VCSREDKRTI APEHVLKALQ VLGFGEYIED  60
VYTAYEQHKL ETMHDSLKGG GKWSTGAAMT EEEAAAAQQR MFDEARARMN GVVSAPKQPE  120
ANQSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-161910648133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.94050.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G058200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438577.17e-91protein Dr1 homolog isoform X2
SwissprotP495927e-59NC2B_ARATH; Protein Dr1 homolog
TrEMBLB9I2N55e-83B9I2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05470.18e-84(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.34e-56nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]