PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G065000.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 601aa MW: 65653.8 Da PI: 9.0109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G065000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00039	263	280	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ Potri.012G065000.1 263 RSKHSATEQRRRSKINDR 280 889*************96 PP
2	HLH	20.8	6.8e-07	294	326	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lrel+P ++K +Ka+ L +++eYI+ Lq Potri.012G065000.1 294 RFQMLRELIPRG----DQKKDKASFLLEVIEYIQFLQ 326 699******7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.4E-22	258	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-12	259	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.985	261	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.40E-12	263	330	No hit	No description
SMART	SM00353	1.6E-4	267	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MELPQQRPFG TEGSKPTHDL LSLYSHSSTV QQDPRPPSQG GYLKTHDFLQ PLERGGKTTA 60 KDITNVEVLT VEKPPPPAPP PSVEHILPGG IGTYSISQIS YFNERVPKPE NTIFSVAQDS 120 STDKNDDNSN CSSYSGSGFT LWEESALKKG KTGKENVGER SNIIREAALK TGQWTTSERP 180 SQSSSNNHRS SFNSLSSSQP AGRSSTQSFI EMIKSARGCA LDDDVDDEEE FLLKKETPSP 240 IRKGELRVKV DGKSNDQKPD TPRSKHSATE QRRRSKINDR HLHNVVDLLE AKFRFQMLRE 300 LIPRGDQKKD KASFLLEVIE YIQFLQEKVQ KYDGSYQGWN HETAKLVPWS DARYYCNLTV 360 DPHSLRQKNN SRPVESSVDQ SRGLNSDAGP ALLFAAKLDE RNITVSPSIN PGGARNPVES 420 DMTSANAMDR HPGCTNKSIP FPISLQPNFN PGRTAGAAAQ FPPRLASDAE NMASQTQPQS 480 CHARSWSTVE AVASDKLKEK DLTVEGGTIS ISNAYSQGLV NTLTQALQSS GVDLSRASIS 540 VQIELGKTGN SRQTASTSIT KDNNVLPSNK GTTRSRVSSG EESGQALKKL KTSKASARVA 600 *

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MELPQQRPFG TEGSKPTHDL LSLYSHSSTV QQDPRPPSQG GYLKTHDFLQ PLERGGKTTA  60
KDITNVEVLT VEKPPPPAPP PSVEHILPGG IGTYSISQIS YFNERVPKPE NTIFSVAQDS  120
STDKNDDNSN CSSYSGSGFT LWEESALKKG KTGKENVGER SNIIREAALK TGQWTTSERP  180
SQSSSNNHRS SFNSLSSSQP AGRSSTQSFI EMIKSARGCA LDDDVDDEEE FLLKKETPSP  240
IRKGELRVKV DGKSNDQKPD TPRSKHSATE QRRRSKINDR HLHNVVDLLE AKFRFQMLRE  300
LIPRGDQKKD KASFLLEVIE YIQFLQEKVQ KYDGSYQGWN HETAKLVPWS DARYYCNLTV  360
DPHSLRQKNN SRPVESSVDQ SRGLNSDAGP ALLFAAKLDE RNITVSPSIN PGGARNPVES  420
DMTSANAMDR HPGCTNKSIP FPISLQPNFN PGRTAGAAAQ FPPRLASDAE NMASQTQPQS  480
CHARSWSTVE AVASDKLKEK DLTVEGGTIS ISNAYSQGLV NTLTQALQSS GVDLSRASIS  540
VQIELGKTGN SRQTASTSIT KDNNVLPSNK GTTRSRVSSG EESGQALKKL KTSKASARVA  600
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.13385	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G065000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145375	0.0	EF145375.1 Populus trichocarpa clone WS01123_N13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438325.1	0.0	transcription factor BIM1 isoform X1
Refseq	XP_024438326.1	0.0	transcription factor BIM1 isoform X1
Refseq	XP_024438327.1	0.0	transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-120	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2K1Y9U3	0.0	A0A2K1Y9U3_POPTR; BHLH family protein
STRING	POPTR_0012s06650.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-109	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.012G065000.1

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]