PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G072700.3

Common Name

POPTR_0012s07470g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 250aa MW: 27295.2 Da PI: 7.0795

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G072700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.1e-06	153	179	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR+ri +++ L++l+P + Potri.012G072700.3 153 SHSLAERARRERIGERMKILQDLVPGC 179 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-8	146	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.34E-4	147	188	No hit	No description
PROSITE profile	PS50888	9.978	149	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-8	152	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDPPLINEKS FSAANPSSYS LTEIWPFPPP SSTALGLRMA NLADRDGSVD ESTVTEQRGG 60 NRNGNRKARD LSSEEDDSSI MVSTTTSAHD LNDLNGKRRK ISGSRNENND SRAEIEASSA 120 ANNKPAEPSS KPSEPPMQDY IHVRSRRGQA TDSHSLAERA RRERIGERMK ILQDLVPGCN 180 KFLSMKLEAV NSRMSTSPAI EGLHPKDLGA QPFDATGMIF GPQPTRDYVQ GSQPEWLHMQ 240 VGGSFKRAT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.11525	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G072700.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438461.1	0.0	transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	2e-65	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2K1YA88	0.0	A0A2K1YA88_POPTR; Uncharacterized protein
STRING	POPTR_0012s07470.1	1e-179	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	7e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.012G072700.3
Entrez Gene	7483457

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]