PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G072700.4

Common Name

POPTR_0012s07470g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 238aa MW: 26022.9 Da PI: 6.1473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G072700.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	153	200	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka L + ++YI+sLq Potri.012G072700.4 153 SHSLAERARRERIGERMKILQDLVPGC----NKVIGKALALDEIINYIQSLQ 200 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-17	146	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.60E-7	147	204	No hit	No description
PROSITE profile	PS50888	14.888	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-16	149	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-7	153	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-7	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDPPLINEKS FSAANPSSYS LTEIWPFPPP SSTALGLRMA NLADRDGSVD ESTVTEQRGG 60 NRNGNRKARD LSSEEDDSSI MVSTTTSAHD LNDLNGKRRK ISGSRNENND SRAEIEASSA 120 ANNKPAEPSS KPSEPPMQDY IHVRSRRGQA TDSHSLAERA RRERIGERMK ILQDLVPGCN 180 KVIGKALALD EIINYIQSLQ CQVEFLSMKL EAVNSRMSTS PAIEGLHPKD VTWCTAI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.11525	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G072700.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318005.1	1e-168	transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	2e-73	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9I330	1e-166	B9I330_POPTR; Uncharacterized protein
STRING	POPTR_0012s07470.1	1e-167	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.012G072700.4
Entrez Gene	7483457

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]