PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G079100.1
Common NamePOPTR_0012s08050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 180aa    MW: 20382.7 Da    PI: 9.8079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G079100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-111364555
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         + +Er+RR ++++   +L +llP+ ++k+++  ls  + Le+A  YIk+L+
  Potri.012G079100.1 13 RKTVERNRRIHMKDLCLKLASLLPPhLFKPSKDMLSQQDQLELAACYIKQLR 64
                        6789*********************998888888****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.95E-6668No hitNo description
Gene3DG3DSA:4.10.280.105.7E-9767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.531863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-101077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-71463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00291469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKKRTSESSR LDRKTVERNR RIHMKDLCLK LASLLPPHLF KPSKDMLSQQ DQLELAACYI  60
KQLRERVEGL KRVKEEQAIT TTRTSSSAKT SMMIGLRLPV VELRDFGSTI EVVLISGLNK  120
NFMFYEVINV LSDEGAEVIS ASYSTVGDKV FHTIHAQVRI SRVGVETSRV CERLQELIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G079100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318646.11e-129transcription factor bHLH162
TrEMBLB9I3871e-128B9I387_POPTR; Uncharacterized protein
STRINGPOPTR_0012s08050.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-30bHLH family protein