PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G092500.1
Common NamePOPTR_0012s09400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 478aa    MW: 53209 Da    PI: 5.4751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G092500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.12.9e-13130152426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G++CkF+H+
  Potri.012G092500.1 130 EDCAFYMKTGTCKFGANCKFNHP 152
                         89********************9 PP
2zf-CCCH33.95.2e-11181203527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C+++++tG CkyG  C+F+H++
  Potri.012G092500.1 181 ECKYYLKTGGCKYGTACRFNHSR 203
                         6********************95 PP
3zf-CCCH36.48.7e-12232255326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C +f+r+G Ck+G++Ck++H+
  Potri.012G092500.1 232 EKECEYFMRNGSCKFGANCKYNHP 255
                         689********************9 PP
4zf-CCCH23.69e-08367392227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C+f++++G Ck+ ++Ck++H++
  Potri.012G092500.1 367 GQPQCSFYMKFGDCKFKSNCKYHHPK 392
                         7899********************96 PP
5zf-CCCH35.61.5e-11414437326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C++++r+G+Ck+G++CkF H+
  Potri.012G092500.1 414 QNICSHYSRYGICKFGPSCKFDHS 437
                         679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.24E-6125154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009126154IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7126153IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10130152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5132151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089176204IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6180207IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8181203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-6182203IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6229256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15229257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6230256IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9232255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4235254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173365393IPR000571Zinc finger, CCCH-type
SMARTSM003560.027365392IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5367392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5369394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6409437IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5411438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887411439IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9414437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5416438IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDQQIESPIP IIHKEIPQLG FQSFSSSPRF PSTPSDPDQT ALDDDNHLHQ ELQNQLDLKE  60
GSLNSNDSHE EEEEEEEEFK SDKKIEFFYE SIEKVGDGGD DLENKNERSN DIENNNSSGY  120
HQYPVRPEAE DCAFYMKTGT CKFGANCKFN HPLRRKNQVQ LTVKEKTKER EEATEKPSLI  180
ECKYYLKTGG CKYGTACRFN HSRAKYSVPP VKIPMSPALE LNFLGLPIRL GEKECEYFMR  240
NGSCKFGANC KYNHPDPTAV GGSDHPSTFL NGGSASLPVP SSSSVGSWSS PRALNDPTSF  300
VPIMFSPNQG VPPQSPDWNG YQAPLYPPER SLHPPLSYAL INIATESNVY APQQQQIVVD  360
EFPERPGQPQ CSFYMKFGDC KFKSNCKYHH PKNRISKSPP LTLSDKGLPL RPDQNICSHY  420
SRYGICKFGP SCKFDHSIQP ASSIGSSDDQ NTAFGNSVTQ EAARMAESGN GSDTAVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.99410.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G092500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2231650.0CU223165.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438164.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-132C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2I4KKM10.0A0A2I4KKM1_POPTR; C3H family protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-123C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]