PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G092500.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 316aa    MW: 34847.3 Da    PI: 8.4599
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G092500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.5e-092141727
                        SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                        +++++tG CkyG  C+F+H++
  Potri.012G092500.4 21 QYYLKTGGCKYGTACRFNHSR 41
                        59*****************95 PP
2zf-CCCH37.15.2e-127093326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        +++C +f+r+G Ck+G++Ck++H+
  Potri.012G092500.4 70 EKECEYFMRNGSCKFGANCKYNHP 93
                        689********************9 PP
3zf-CCCH24.35.4e-08205230227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C+f++++G Ck+ ++Ck++H++
  Potri.012G092500.4 205 GQPQCSFYMKFGDCKFKSNCKYHHPK 230
                         7899********************96 PP
4zf-CCCH36.39.1e-12252275326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C++++r+G+Ck+G++CkF H+
  Potri.012G092500.4 252 QNICSHYSRYGICKFGPSCKFDHS 275
                         679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.91941IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.3381942IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-62141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-52241IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-66794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.156795IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-66894IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-107093IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-47392IPR000571Zinc finger, CCCH-type
SMARTSM003560.027203230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173203231IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5205230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5207232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7247275IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887249277IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9252275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5254276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MFGRRMTFFF LYYNHFLSML QYYLKTGGCK YGTACRFNHS RAKYSVPPVK IPMSPALELN  60
FLGLPIRLGE KECEYFMRNG SCKFGANCKY NHPDPTAVGG SDHPSTFLNG GSASLPVPSS  120
SSVGSWSSPR ALNDPTSFVP IMFSPNQGVP PQSPDWNGYQ APLYPPERSL HPPLSYALIN  180
IATESNVYAP QQQQIVVDEF PERPGQPQCS FYMKFGDCKF KSNCKYHHPK NRISKSPPLT  240
LSDKGLPLRP DQNICSHYSR YGICKFGPSC KFDHSIQPAS SIGSSDDQNT AFGNSVTQEA  300
ARMAESGNGS DTAVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.99410.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G092500.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438164.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-103C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2I4KKM10.0A0A2I4KKM1_POPTR; C3H family protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-99C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]