PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G093200.3
Common NamePOPTR_0012s09470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 237aa    MW: 26274.3 Da    PI: 8.6127
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G093200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-178693499
                        SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        ++  led+sg++W+vk+  +   +++vl++GW+ F++++gL+ gDf++F ++  s f   v++++k
  Potri.012G093200.3  8 QETFLEDSSGQRWKVKV--SILNDSFVLQEGWSAFASDHGLELGDFIIFNYIMGSHF--EVHIYDK 69
                        5789*************..666666**************************977888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.888170IPR003340B3 DNA binding domain
CDDcd100171.45E-17668No hitNo description
Gene3DG3DSA:2.40.330.103.5E-18674IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17772IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-14769IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVSSLNGQET FLEDSSGQRW KVKVSILNDS FVLQEGWSAF ASDHGLELGD FIIFNYIMGS  60
HFEVHIYDKS ACERLDFSER RNQKERTGNN TQNFNTEYGQ CLAKDKGSMN VHGSSTPNLA  120
GEEICRGQSK LKNDVLKAKM VAKNTSTNKK ETRAEKIVSK AECVEESRDM INRELGKKHE  180
DYGETLVDLS NWGLSKANLG IEGSKKTRAG TKKLSHHAGA SFKSQKEAGL GSKDTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G093200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318699.11e-174B3 domain-containing protein Os02g0598200
RefseqXP_024438004.11e-174B3 domain-containing protein Os02g0598200
RefseqXP_024438005.11e-174B3 domain-containing protein Os02g0598200
TrEMBLA0A2K1YB921e-174A0A2K1YB92_POPTR; Uncharacterized protein
TrEMBLB9I3L41e-173B9I3L4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09470.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-09B3 family protein