PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G103500.1
Common NamePOPTR_0012s10530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 253aa    MW: 28710.9 Da    PI: 6.522
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G103500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.2e-50141401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF+Pt+eelv +yLk+k+ + +l++ +vi+ev+++k++Pw+Lp      e+e yfFs+++ ky++g+r nra +sgyWkatg d++
  Potri.012G103500.1  14 LPPGFRFQPTEEELVFQYLKRKILSWPLPA-SVIPEVNVCKYDPWELPGD---MEQERYFFSNKEAKYPNGNRVNRASSSGYWKATGLDRQ 100
                         79****************************.99***************54...46799********************************* PP

                 NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+   ++++vg+kktLvfy+g+ap+g++tdWvmheyrl
  Potri.012G103500.1 101 IVSSswkNNHVVGMKKTLVFYRGKAPHGSRTDWVMHEYRL 140
                         ***98988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5510188IPR003441NAC domain
PROSITE profilePS5100554.59714188IPR003441NAC domain
PfamPF023658.5E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MENFNFVRDG MSGLPPGFRF QPTEEELVFQ YLKRKILSWP LPASVIPEVN VCKYDPWELP  60
GDMEQERYFF SNKEAKYPNG NRVNRASSSG YWKATGLDRQ IVSSSWKNNH VVGMKKTLVF  120
YRGKAPHGSR TDWVMHEYRL VNLGVETTDS NFPQTENSAQ ASYYYIFYAT QNSSFQMDKW  180
VVCRIFLKNK GAATTEITET RTNDNVGGTQ PRLFDFMGRD EIVFDSASSA CSSSSSLAGI  240
SSNEQDHEQS ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461419217169NO APICAL MERISTEM PROTEIN
1ut4_B3e-461419217169NO APICAL MERISTEM PROTEIN
1ut7_A3e-461419217169NO APICAL MERISTEM PROTEIN
1ut7_B3e-461419217169NO APICAL MERISTEM PROTEIN
4dul_A3e-461419217169NAC domain-containing protein 19
4dul_B3e-461419217169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G103500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700130.0KP770013.1 Populus tomentosa trans-cinnamate 4-monooxygenase (Potri.015G102100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438680.11e-166NAC domain-containing protein 83 isoform X1
SwissprotQ9FY932e-74NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2K1YBR11e-165A0A2K1YBR1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s10530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-76NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]