PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G125600.1
Common NamePOPTR_0012s14770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28747.8 Da    PI: 7.5813
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G125600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-271059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rien + rqvtfskRr g++KK +ELSvLCdae+ +iifss+gklye+++
  Potri.012G125600.1 10 RIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCN 59
                        8***********************************************95 PP
2K-box66.96.7e-2377167796
               K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                          + le++++e+ q+e+++++ke++ Lq + R ++Ge+L+sL ++ L +Le+qLe s++k+R++K ell +q+++l++kek+l+een++++ 
  Potri.012G125600.1  77 MRvLESNDWEQIQKESKRIRKETDDLQLSVRCYKGENLSSLHHEGLVELEKQLECSVNKVRAQKLELLQQQVDNLRRKEKMLEEENQQIQY 167
                         45588999*******************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.88161IPR002100Transcription factor, MADS-box
CDDcd002653.08E-39272No hitNo description
SuperFamilySSF554552.22E-29277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.0E-2081168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.40985181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGKIAITR IENRTARQVT FSKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCNE  60
SSSIPHIIRR YEISKGMRVL ESNDWEQIQK ESKRIRKETD DLQLSVRCYK GENLSSLHHE  120
GLVELEKQLE CSVNKVRAQK LELLQQQVDN LRRKEKMLEE ENQQIQYHLH HVAMLEQQQA  180
AAAMVKPMEQ QRMLEQFQFS DEDQPISSLL QLAPLPPQFQ PYRVQPTQPN LQDFSLSIPD  240
PSNYIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18171169MEF2C
5f28_B6e-18171169MEF2C
5f28_C6e-18171169MEF2C
5f28_D6e-18171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G125600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318890.20.0MADS-box protein FBP24 isoform X1
SwissprotQ9ATE53e-69FBP24_PETHY; MADS-box protein FBP24
TrEMBLB9I4N61e-180B9I4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]