PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G132000.1
Common NamePOPTR_0012s14080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 241aa    MW: 27438.2 Da    PI: 9.3663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G132000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-1272124155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++++h  +Er+RR+++ + ++ Lr llP  +   ++K s ++   + v+YIk+Lq
  Potri.012G132000.1  72 KKMMHRNIERQRRQEMTTLYASLRALLPLEF--IKGKRSISDHMNESVNYIKYLQ 124
                         6899*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1468142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-1071128No hitNo description
PROSITE profilePS5088813.55471123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-972124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1072140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-477129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFPLHQGDEL CFNISSDPHQ QHNIPQDLIL ARYAALQGSD TTNKMENDRR RFLISMDSNH  60
EVARDHSKNN NKKMMHRNIE RQRRQEMTTL YASLRALLPL EFIKGKRSIS DHMNESVNYI  120
KYLQKKIKEL SAKRDGLKKS PNLSFDSPSG SSNKYSPISP VTLQPYPGGI EVVFDSDFRG  180
QDSPLSRVLQ VLLEEGISVV NCVSTKVNER LFHTVQTEVN DPACLNLSEL RQKLTLRVVS  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G132000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318856.11e-179transcription factor bHLH118
SwissprotQ9STJ61e-45BH126_ARATH; Transcription factor bHLH126
TrEMBLB9I4H51e-178B9I4H5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14080.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-48bHLH family protein