PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G134800.1
Common NamePOPTR_0012s13800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 453aa    MW: 48970 Da    PI: 7.68
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G134800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08130150526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+f+ + G C++Gd+C++ H+
  Potri.012G134800.1 130 VCNFWVQ-GNCSFGDKCRYLHS 150
                         7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.923965IPR000571Zinc finger, CCCH-type
SMARTSM003560.774164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258126152IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5127151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7128150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6129146IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5129150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.4E-16147260IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.4E-5156195IPR001680WD40 repeat
SuperFamilySSF509782.99E-47157443IPR017986WD40-repeat-containing domain
PfamPF004003.5E-4159195IPR001680WD40 repeat
PROSITE profilePS5029421.173163412IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.717163204IPR001680WD40 repeat
PRINTSPR003203.7E-6182196IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780182196IPR019775WD40 repeat, conserved site
SMARTSM003202.8235272IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.107.6E-32261443IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.016279316IPR001680WD40 repeat
PROSITE profilePS5008211.244286325IPR001680WD40 repeat
PRINTSPR003203.7E-6303317IPR020472G-protein beta WD-40 repeat
SMARTSM003204.8E-4319356IPR001680WD40 repeat
PfamPF004000.015321355IPR001680WD40 repeat
PRINTSPR003203.7E-6343357IPR020472G-protein beta WD-40 repeat
SMARTSM0032011360403IPR001680WD40 repeat
SMARTSM003205.6406443IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDLDYNGGNT TNTNKRVFHR LGGGKSVNDT SNQHNHQHQQ NQKVCYHWRA GKCNRFPCPF  60
LHRELPAPPP HASVNGGGGG GGGAKRGFAG NDSSSFSGRR GGNSNYSNSW GRFGNKGDVR  120
GVKRVSVEKV CNFWVQGNCS FGDKCRYLHS WSLGDGFSLV TQLEGHQKVI SGIALPSGSD  180
KLYTGSKDET VRVWDCQSGQ CTGVVNLGGE VGCMISEGPW IFVGLPNVVK AWNTQTNADL  240
SLNGPIGQVY ALVVGNDLLF AGTQDGSILV WKFNAATYNF EPAVSLKDHK MAVVSLVVGA  300
NRLYSGSMDH SIKVWSLETL QCIQTLTDHT SVVMSLLCWE QFLLSCSLDQ TIKVWAATES  360
GNLEVTFTHN EEHGLLTLCG MHDPEGKPVL LCSSNDNSVH LYDLPSFSEK GKMFAKQEIR  420
AIQTGPGGLF FTGDGTGQVR VWNSVAVPTT TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-201514435323Tako8
6g6n_A4e-201514435323Tako8
6g6n_B4e-201514435323Tako8
6g6n_C4e-201514435323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G134800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318843.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLB9I4E60.0B9I4E6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1