PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.013G001700.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 245aa MW: 27283.1 Da PI: 8.2278

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.013G001700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.5	3.1e-17	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+ Potri.013G001700.1 11 ICNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSP 50 789************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.6E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.666	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.52E-23	2	85	No hit	No description
SuperFamily	SSF55455	2.22E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-19	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MTRKKVKLAY ICNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIVYSP YDSQPEVWPS 60 PLGVQRVVTK FKTMPEIEQG KKMVNQESFL RQRITKSCDH IKKQRKDNRE KEVTHAMFHC 120 LGGNVSLGNL HMMDLNDLGW MIDHSLRDID MTLNNGSGSG TSHTSQLEAA ATTGAGPSSA 180 REQAPESSQM VTNDFEVNVG AMQRQEWFMD LMTPQEHMGF GGEDMVLPSG DNSQNGLWTN 240 SFFP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYICNDSARKATFKKRK
2	21	25	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.013G001700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214596	0.0	AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318922.3	0.0	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	4e-66	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A2K1XYN5	0.0	A0A2K1XYN5_POPTR; Uncharacterized protein
STRING	POPTR_0013s00350.1	1e-170	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-65	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Potri.013G001700.1

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]