PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G004800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 179aa    MW: 19572.7 Da    PI: 6.4907
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G004800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07981101325
                         S--TTTTT-SS-S CS
             zf-CCCH  13 GtCkyGdrCkFaH 25 
                         G+C+yGd+Ck+ H
  Potri.013G004800.1  98 GFCPYGDSCKYLH 110
                         9************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.1E-588111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.15591113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-595111IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-598110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MLESAIFKAP LIYAPNLSGS AETATATPSI PITLMLVALL RDSATALSKR YYYILYFLEI  60
YEFNSFAFAM INLGLVGFFD VFSCFHLKWW CFFVVLKGFC PYGDSCKYLH TNFATSQGTA  120
FKDNVQSPTM PGNQLAGGSS FPGVAVRESM GMSWGNLPPS LKPPPEGGYP PLPFVDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G004800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318931.17e-55zinc finger CCCH domain-containing protein 3 isoform X2
TrEMBLA0A3N7FUX62e-53A0A3N7FUX6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s00620.13e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-06C3H family protein