PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G008600.2
Common NamePOPTR_0013s01000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 320aa    MW: 36096.4 Da    PI: 4.942
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G008600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-092532852355
                         SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yp++ee+++L++ +gL+++q+ +WF N+R ++
  Potri.013G008600.2 253 PYPTEEEKAKLSEITGLDQKQINNWFINQRKRH 285
                         8*****************************885 PP
2ELK24.85.2e-09206226222
                 ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                         LK  Ll KYsg+L+sL++EF+
  Potri.013G008600.2 206 LKGVLLSKYSGHLSSLRKEFL 226
                         89999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.9E-1963107IPR005540KNOX1
PfamPF037905.9E-1965103IPR005540KNOX1
SMARTSM012563.4E-26110161IPR005541KNOX2
PfamPF037914.1E-25113160IPR005541KNOX2
PROSITE profilePS512139.551205225IPR005539ELK domain
SMARTSM011881.1E-5205226IPR005539ELK domain
PfamPF037894.6E-8206226IPR005539ELK domain
PROSITE profilePS5007112.098225288IPR001356Homeobox domain
SuperFamilySSF466899.41E-19227296IPR009057Homeodomain-like
SMARTSM003891.8E-12227292IPR001356Homeobox domain
CDDcd000861.68E-14229289No hitNo description
Gene3DG3DSA:1.10.10.606.7E-27230291IPR009057Homeodomain-like
PfamPF059207.4E-17245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEGFYRFNPT ISCSPNDIAR LENLPVVNFT DATTSNNEFH SQVGNLLQAG HGYTPVTESD  60
MHDVIKTQIA NHPRYPDLVS AYVECRKVGA PPEMVSLLED IGRCSYQINT CYEIGADPEL  120
DEFMESYCEV LHRYKEELSK PFDEATTFLS SIESQLSSLC KGTLTKIFDY GSDEPAWTSE  180
EELSCGEVEA SEIPGSLGFH SSDQNLKGVL LSKYSGHLSS LRKEFLKQRK KGKLPKDAKT  240
LLLDWWNHHY RWPYPTEEEK AKLSEITGLD QKQINNWFIN QRKRHWKPSK DMRFALMESV  300
GGDTAGPTCY GIVGDDIGT*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G008600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090455e-48AC209045.1 Populus trichocarpa clone POP061-B03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438850.10.0homeobox protein knotted-1-like 1 isoform X2
SwissprotQ9FP291e-94KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2I4KKK90.0A0A2I4KKK9_POPTR; TALE family protein
STRINGPOPTR_0013s01000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-82KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]