PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.013G014000.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 149aa MW: 16491.4 Da PI: 8.0801

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.013G014000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.5	2.9e-10	80	130	4	55
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtr 55 ++YAk vGF+ r+++s+k k++g i + +vCskeg ++++ kk +k rr++ Potri.013G014000.1 80 KSYAKAVGFQWRTRTSRKDKNKGGICTVSMVCSKEGANKSRGKK-NKLRRPT 130 68***************************************999.4444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-7	80	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MDRLLIGHEI GLNATPFLER QHLSTSNDGS GVEEEDEEEG KEKEEAGHSS LPNGTENPLT 60 QSPYDGQVFR CLQALVPHLK SYAKAVGFQW RTRTSRKDKN KGGICTVSMV CSKEGANKSR 120 GKKNKLRRPT SKEGANNFFL EKGWLVED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.013G014000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036894.1	6e-25	PREDICTED: histone acetyltransferase KAT6B-like
TrEMBL	A0A2K1XZD6	1e-106	A0A2K1XZD6_POPTR; Uncharacterized protein
STRING	POPTR_0005s02350.1	2e-24	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-07	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.013G014000.1