PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G019500.1
Common NamePOPTR_0013s02020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 144aa    MW: 16469.3 Da    PI: 5.3344
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G019500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB146.46.2e-46599397
               NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                        +qd++lPianv+r+mk+ lP  a++sk+ak+ +qec++efisfvtseas+kc++e+rk++ngdd++wal++lGf+dy+++   yl+kyre+e+
  Potri.013G019500.1  5 KQDQLLPIANVGRVMKQHLPPTARVSKEAKQRMQECATEFISFVTSEASNKCRKENRKALNGDDVCWALSSLGFDDYADTTVRYLHKYREAER 97
                        79******************************************************************************************9 PP

               NF-YB 96 ek 97
                        ek
  Potri.013G019500.1 98 EK 99
                        97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-464123IPR009072Histone-fold
SuperFamilySSF471136.89E-376120IPR009072Histone-fold
PfamPF008085.4E-23973IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-153755No hitNo description
PRINTSPR006153.1E-155674No hitNo description
PRINTSPR006153.1E-157593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDDDKQDQLL PIANVGRVMK QHLPPTARVS KEAKQRMQEC ATEFISFVTS EASNKCRKEN  60
RKALNGDDVC WALSSLGFDD YADTTVRYLH KYREAEREKA DQKKATDTEK VNKDEESNHT  120
SCQAVQQQTD QIPEPTILEF RFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-36694492Transcription factor HapC (Eurofung)
4g92_B3e-36694492Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G019500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319000.11e-104nuclear transcription factor Y subunit B-4
SwissprotO040277e-49NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLB9I7Q21e-103B9I7Q2_POPTR; Uncharacterized protein
STRINGPOPTR_0013s02020.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-51nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]