PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G025900.1
Common NamePOPTR_0013s02680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 344aa    MW: 38762.9 Da    PI: 6.5093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G025900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13140191155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Potri.013G025900.1 140 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 191
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.19E-13138195No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16139212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-10145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALEAAVFQQ DWFGHSSKEL YNFPGGNWSY DFGLDQNEED QDKSCSSYFL ENQTETFLHG  60
DWNPLPPPDS MVPPFSDLQL TCSNIPSLSE ASINAANGLM STTPTSDHHH HLGESSAMPA  120
TRVKRRRSRC KKNKEEIENQ RMTHIAVERN RRKQMNEYLS VLRSLMPESY VQRGDQASII  180
GGAINFVKEL EQKLQVLGAC KEMKEKPNGD DQQHVSSLPF SKFFIFPQYT TSSIHCESSA  240
GKDEKLMKSQ SAIADIEVTM VESHANLKIR SKRRPKQLLK VVSALHSMRL TVLHLNVSTV  300
DQIVLYSLSV KVEDDCKLSS VDEIATAVYQ MLGRIQEESM LNC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140151RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.114880.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G025900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9866730.0JX986673.1 Populus tomentosa helix-loop-helix protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319028.20.0transcription factor bHLH94
TrEMBLB9I7Y80.0B9I7Y8_POPTR; BHLH family protein
STRINGPOPTR_0013s02680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-80bHLH family protein