PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G040700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 434aa    MW: 46752.8 Da    PI: 6.0767
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G040700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.83.7e-16225280358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         + kr rr+ +NRe+ArrsR RK+a + eLe+ v++L  eN++L k l  +++++ +
  Potri.013G040700.1 225 DAKRVRRMLSNRESARRSRSRKQAHLTELETQVAQLRVENSSLLKSLTDISQKYNE 280
                         68******************************************999999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-18223287IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-12224278No hitNo description
PROSITE profilePS5021711.404225280IPR004827Basic-leucine zipper domain
PfamPF001709.5E-13226278IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12227277No hitNo description
PfamPF124989.5E-48294420IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MERVFSVEDN ITELFWSPPP PPPEDLSKMN RSESEWAFER FLQEASAVTL DDNTSSNSSA  60
DKTDVVQIKD HGNSNNNATS KCSFSNGTCA TAASSFAAPA IIPVESDDYH AFLKSKLNLA  120
CAAVALTRAS FVKPLDSPAA AESGSQASNT SQLGSHAPSK GAGYDLPISQ DKDANEPLGT  180
PSLPSMQRKS AVTVKPTTSV SSRELSEDDE NEAETELTEN MQPADAKRVR RMLSNRESAR  240
RSRSRKQAHL TELETQVAQL RVENSSLLKS LTDISQKYNE SAVDNRVLKA DVETLRAKVK  300
MAEETVKRFT GLNTMFHALP DISTMSMSSF DGSPSDTADA AVPVKDDPKH HFYKAPNNPI  360
TTHDSRPRGN NVLADISSVE NVQPNPVPAA GVSGNKMGRT PSLQRVASLE HLQKRIRGGA  420
SPCGPQSNGE QAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246RRSRSRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G040700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375870.0AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439529.10.0light-inducible protein CPRF2 isoform X2
SwissprotQ990901e-133CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2K1Y0Q80.0A0A2K1Y0Q8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-74bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]