PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G040700.3
Common NamePOPTR_0013s03800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 249aa    MW: 27260.5 Da    PI: 9.788
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G040700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1521.5e-164095358
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                        + kr rr+ +NRe+ArrsR RK+a + eLe+ v++L  eN++L k l  +++++ +
  Potri.013G040700.3 40 DAKRVRRMLSNRESARRSRSRKQAHLTELETQVAQLRVENSSLLKSLTDISQKYNE 95
                        68******************************************999999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1838102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-123993No hitNo description
PROSITE profilePS5021711.4044095IPR004827Basic-leucine zipper domain
PfamPF001708.7E-144193IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.66E-124292No hitNo description
PfamPF124982.7E-48109235IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQRKSAVTVK PTTSVSSREL SEDDENEAET ELTENMQPAD AKRVRRMLSN RESARRSRSR  60
KQAHLTELET QVAQLRVENS SLLKSLTDIS QKYNESAVDN RVLKADVETL RAKVKMAEET  120
VKRFTGLNTM FHALPDISTM SMSSFDGSPS DTADAAVPVK DDPKHHFYKA PNNPITTHDS  180
RPRGNNVLAD ISSVENVQPN PVPAAGVSGN KMGRTPSLQR VASLEHLQKR IRGGASPCGP  240
QSNGEQAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15461RRSRSRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G040700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375870.0AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439529.10.0light-inducible protein CPRF2 isoform X2
SwissprotQ990903e-80CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2K1Y0Q81e-179A0A2K1Y0Q8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03800.11e-180(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.16e-52bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]