PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G040700.4
Common NamePOPTR_0013s03800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 214aa    MW: 23364.3 Da    PI: 9.99
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G040700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.53.8e-151160958
                        CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                        r+ +NRe+ArrsR RK+a + eLe+ v++L  eN++L k l  +++++ +
  Potri.013G040700.4 11 RMLSNRESARRSRSRKQAHLTELETQVAQLRVENSSLLKSLTDISQKYNE 60
                        99************************************999999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-13167IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.78E-111157No hitNo description
PROSITE profilePS5021710.0711160IPR004827Basic-leucine zipper domain
PfamPF001704.9E-121158IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-101159No hitNo description
PfamPF124981.8E-4874200IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MESCGYVFFS RMLSNRESAR RSRSRKQAHL TELETQVAQL RVENSSLLKS LTDISQKYNE  60
SAVDNRVLKA DVETLRAKVK MAEETVKRFT GLNTMFHALP DISTMSMSSF DGSPSDTADA  120
AVPVKDDPKH HFYKAPNNPI TTHDSRPRGN NVLADISSVE NVQPNPVPAA GVSGNKMGRT  180
PSLQRVASLE HLQKRIRGGA SPCGPQSNGE QAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926RRSRSRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G040700.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375870.0AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439527.11e-151light-inducible protein CPRF2 isoform X1
SwissprotQ990904e-68CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2K1Y0Q81e-145A0A2K1Y0Q8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03800.11e-146(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.16e-45bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]