PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G041000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 364aa    MW: 39200.5 Da    PI: 6.1003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G041000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89e-09181225554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR ri ++   L+el+P++      K + a++L + v+Y+k L
  Potri.013G041000.1 181 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 225
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-14174236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-10174230No hitNo description
PROSITE profilePS5088815.783176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFLEQILA AQPPGYGGGG EVMGSTSLPM MGLQLGSCAG NVGLLRSNAN  60
NNMGMMPLGL NLEHHGFLRQ QQDDSGSSLD TNNSNNINNT PPSIKSARIL GRDSVHMTSL  120
FPTFGHLQIH SSIRPTPPPP GPPQIHQINS HPNPGAVSAV PQPPGIRPRV RARRGQATDP  180
HSIAERLRRV RITERVKALQ ELVPTCNKTD RAAMLDEIVD YVKFLRLQIK VLSMSRLGAA  240
GAVAQLVADV PLSSVQVVEL EEMLINTSFL KLFFLSYLLS YGFDEIKGEG NEGGANQQSW  300
ENWSNDDTEQ EVAKLMEEDV GAAMQFLQSK ALCIMPISLA SAIFRARPPN ASTLINTESN  360
TPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G041000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375870.0AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439433.10.0transcription factor UNE12 isoform X1
TrEMBLA0A2K1Y0S40.0A0A2K1Y0S4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-66bHLH family protein