PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G041000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 333aa    MW: 35530.2 Da    PI: 6.9561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G041000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09181225554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR ri ++   L+el+P++      K + a++L + v+Y+k L
  Potri.013G041000.2 181 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 225
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.72E-10174230No hitNo description
SuperFamilySSF474592.09E-14174236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFLEQILA AQPPGYGGGG EVMGSTSLPM MGLQLGSCAG NVGLLRSNAN  60
NNMGMMPLGL NLEHHGFLRQ QQDDSGSSLD TNNSNNINNT PPSIKSARIL GRDSVHMTSL  120
FPTFGHLQIH SSIRPTPPPP GPPQIHQINS HPNPGAVSAV PQPPGIRPRV RARRGQATDP  180
HSIAERLRRV RITERVKALQ ELVPTCNKTD RAAMLDEIVD YVKFLRLQIK VLSMSRLGAA  240
GAVAQLVADV PLSSIKGEGN EGGANQQSWE NWSNDDTEQE VAKLMEEDVG AAMQFLQSKA  300
LCIMPISLAS AIFRARPPNA STLINTESNT PS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G041000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375870.0AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439434.10.0transcription factor UNE12 isoform X2
SwissprotO227682e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4KKU00.0A0A2I4KKU0_POPTR; BHLH family protein
STRINGPOPTR_0005s05500.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]