PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G079700.5
Common NamePOPTR_0013s07720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 174aa    MW: 19245.7 Da    PI: 6.5042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G079700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.21.1e-1298451127
                 NAM  51 vkaeekewyfFskrdkk..yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++++e yfFs+ + k  y+++ r nr+t++g W+a+g+d +v+s+ +ge++g+kk++v      ++g   + vmhe++
  Potri.013G079700.5   9 INSKDREGYFFSPLHAKnsYTNNGRINRSTNTGSWQAKGRDCKVTSElNGEVIGIKKIFVHSC--IKDG--IKYVMHEFS 84 
                         56788999***9765551167999**********************9999**********983..3333..579999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.8241106IPR003441NAC domain
SuperFamilySSF1019411.18E-1410106IPR003441NAC domain
PfamPF023652.2E-61684IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKGLLLTWIN SKDREGYFFS PLHAKNSYTN NGRINRSTNT GSWQAKGRDC KVTSELNGEV  60
IGIKKIFVHS CIKDGIKYVM HEFSASFNLP NCRDLRALVL CKVMMKTLDK KTEGSYMKVK  120
ETEEEASSPP ASDEDQQTDN LICDDGGTNC LAASASANHA VEFTIPEEVR LDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G079700.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439150.11e-119NAC domain-containing protein 71
RefseqXP_024439151.11e-119NAC domain-containing protein 71
RefseqXP_024439152.11e-119NAC domain-containing protein 71
TrEMBLA0A2K1Y2S61e-118A0A2K1Y2S6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s07720.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.29e-13NAC domain containing protein 50