PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G086800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 426aa    MW: 46495.6 Da    PI: 8.6838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G086800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-113460127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Potri.013G086800.1 34 PGEPDCSYYIRTGLCRFGATCRFNHPP 60
                        5789*********************97 PP
2zf-CCCH38.91.5e-1281105327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Potri.013G086800.1  81 QPECQYYLKTGTCKFGATCKFHHPR 105
                         799********************96 PP
3zf-CCCH375.9e-12129151527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C +++rtG+Ck+G++CkF+H++
  Potri.013G086800.1 129 ECAYYLRTGQCKFGSTCKFHHPQ 151
                         7********************97 PP
4zf-CCCH37.92.9e-12286312127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Potri.013G086800.1 286 PGQPECQFYMKTGDCKFGAVCRFHHPR 312
                         5789*********************96 PP
5zf-CCCH40.25.7e-13332358127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Potri.013G086800.1 332 PGEPLCIFYSRYGICKFGPSCKFDHPM 358
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-53360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5873361IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-83560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-43959IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15978106IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-678105IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-1081105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-682107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-584105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065124152IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5124151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6128152IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9129151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4130150IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596285313IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-9287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5291313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709331359IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7331358IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10333358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5334358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4336356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MFELSYPVSF SDAMWQMNLR SSETMEAGPY PERPGEPDCS YYIRTGLCRF GATCRFNHPP  60
NRKLAIAAAR MKGEFPERIG QPECQYYLKT GTCKFGATCK FHHPRDKAGI SGRVSLNILG  120
YPLQPNEIEC AYYLRTGQCK FGSTCKFHHP QPTNMMVPLR GSPIYPTVSS PTTPGQQSYP  180
GGLATTWSRA SFITSPRWQA PSSYTPLILP QGVVSVPGWN AYSGQLGSVS SPESQQQTGN  240
SQIYGTSRHS ESVNAGSQGT FSPYRSGSAP LGFYALQRES VFPERPGQPE CQFYMKTGDC  300
KFGAVCRFHH PRERLIPAPD CVLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV  360
FTYNLTASSS ADAPVRRLLG SSSGSPGLTL SSEGLVEAGP TKPRRLSLSE PRQMPPGDDN  420
IDTGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.33710.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G086800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2087321e-156AC208732.1 Populus trichocarpa clone JGIACSB1073-L05, complete sequence.
GenBankAC2128421e-156AC212842.1 Populus trichocarpa clone POP001-E16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376056.20.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1Y3460.0A0A2K1Y346_POPTR; Uncharacterized protein
STRINGXP_002512627.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1