PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G091400.1
Common NamePOPTR_0013s09350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 319aa    MW: 35656 Da    PI: 6.7455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G091400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-11119177563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r + NR +A rs +RK  ++ eLe+kv +L++e ++L  +l   +   ++l++e+
  Potri.013G091400.1 119 KRAKRIMANRQSAARSKERKARYVSELERKVHTLQTEATTLSAQLTLFQRDTSSLTTEN 177
                         9*********************************************9999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-15115179IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749117180IPR004827Basic-leucine zipper domain
PfamPF001701.1E-9119177IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-10119170No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-11119174No hitNo description
CDDcd147032.19E-22120169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MHDSSNSDAS AFPFRSSCHR RAHSDVPFRV TDDLDLVPDE LVSEEDLFCS YMNMEKLGSR  60
PEEGPSGLKQ DNAEQEKAYV RPRHKHSNSV DGSSLMESID SKKAMAPEKL AELWALDPKR  120
AKRIMANRQS AARSKERKAR YVSELERKVH TLQTEATTLS AQLTLFQRDT SSLTTENSEL  180
KLRLQAMEQQ AQLRDALNEA LKKEVERLKF ATGEIMTPTD SYNLGIQHIP YNHSPLVSPR  240
PRPGSVDALN IQIPQFHPLQ SNLSPRQPGI AASHSHALSE MLPQDPLRWL QGFDISSRSS  300
VLVRSECPSI SASEDSSL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G091400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103820.0AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439088.10.0bZIP transcription factor 18 isoform X1
SwissprotO228731e-102BZP18_ARATH; bZIP transcription factor 18
TrEMBLB9I8D70.0B9I8D7_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-104bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]