PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G101100.1
Common NamePOPTR_0013s10340g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 181aa    MW: 19905.2 Da    PI: 4.9002
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G101100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-181464155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa a++ a++ ++g
  Potri.013G101100.1 14 SSYRGVRKRK-WGKWVSEIREP---GKKSRIWLGSFETPEMAATAYDVAALHFRG 64
                        67*****999.**********8...557**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-231473IPR016177DNA-binding domain
CDDcd000188.17E-321474No hitNo description
PfamPF008476.3E-121464IPR001471AP2/ERF domain
PROSITE profilePS5103223.8281572IPR001471AP2/ERF domain
SMARTSM003804.3E-371578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-321573IPR001471AP2/ERF domain
PRINTSPR003675.0E-101627IPR001471AP2/ERF domain
PRINTSPR003675.0E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEERNTASHG GMSSSYRGVR KRKWGKWVSE IREPGKKSRI WLGSFETPEM AATAYDVAAL  60
HFRGYDAKLN FPDLVHSLPK PASSDAEDIR IAAHEAAMSL RPSTVESSQG GSSSSNVGPI  120
TVRLSPSQIQ AINESPLDSP KMWMQMSGIA MPDESMIYSS IDVGEEEEWD NKQTDSLWDP  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-181677668ATERF1
3gcc_A7e-181677668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G101100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376158.11e-130ethylene-responsive transcription factor ERF021
SwissprotQ9C9I28e-62ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLB9MWI01e-128B9MWI0_POPTR; Uncharacterized protein
STRINGPOPTR_0013s10340.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-61ERF family protein