PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G101200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 223aa    MW: 24346.5 Da    PI: 4.762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G101200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-194999155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  Potri.013G101200.1 49 PRYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYEMPEMAAAAYDVAALHLRG 99
                        68*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-134999IPR001471AP2/ERF domain
CDDcd000183.83E-2249108No hitNo description
SuperFamilySSF541711.44E-2150108IPR016177DNA-binding domain
SMARTSM003801.5E-3550113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3150108IPR001471AP2/ERF domain
PROSITE profilePS5103222.97250107IPR001471AP2/ERF domain
PRINTSPR003679.1E-135162IPR001471AP2/ERF domain
PRINTSPR003679.1E-1389109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEQCIASSSQ SLICTSTLPE YHSSVEKTFL LLAKMEGRTR DGHPGISQPR YRGVRQRKWG  60
KWVSEIREPG KKTRIWLGSY EMPEMAAAAY DVAALHLRGR GAQLNFPEMV DSLPRPASSS  120
TEDVQMAAQE AALLFRRPIK CSEGVGGSSS GGGGSLGPVR VGLSPSQIQA INEAPLDSPK  180
MWMELAGALL LDEPVAMGDD IDVELSDEWG EMEHEHDSIW DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1751112668ATERF1
3gcc_A8e-1751112668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G101200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559380.0EF155938.1 Populus trichocarpa TINY-like protein (TINYL19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376157.21e-135ethylene-responsive transcription factor ERF022
SwissprotQ9LQ282e-52ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA9PL881e-134A9PL88_POPTR; TINY-like protein
STRINGPOPTR_0013s10330.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.16e-47ERF family protein