PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G107500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 265aa    MW: 28486.9 Da    PI: 7.8378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G107500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13200245655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++Le+Av+Y+k Lq
  Potri.013G107500.1 200 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVDYVKFLQ 245
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.059194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17197259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-12198249No hitNo description
Gene3DG3DSA:4.10.280.109.5E-17199259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10200245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MHPAPAGSSN TSGGGCGGGG GGGGGGGGGL PRLRSAPATW LLALLEEEEE DPLKQNQNLT  60
QLLTSNAPSS RNSAPFNASS AAVEPGLYET GSGFQRQNSS PADFLGNSGI GSDQGYFSNY  120
GIASNYEYMP PNMEVSPSAK RARELELQNP PARYPPPLKG AQTGSLRASS LIEMEMDKLL  180
EESVPCKIRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQTNT ADMLEEAVDY  240
VKFLQRQIQE LTEQQRKCKC MAKE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G107500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376233.20.0transcription factor bHLH80
SwissprotQ9C8P84e-88BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2K1Y4130.0A0A2K1Y413_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10900.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.17e-74bHLH family protein