PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G107600.1
Common NamePOPTR_0013s11210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18462.3 Da    PI: 8.066
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G107600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65e-161050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i+n+s r+vtf kR++g+lKK  EL +LC++ ++ iifs 
  Potri.013G107600.1 10 LISNESARKVTFRKRKAGLLKKLDELATLCGVIACAIIFSA 50
                        59*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.06E-20165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.787149IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-22160IPR002100Transcription factor, MADS-box
CDDcd001205.70E-21260No hitNo description
PRINTSPR004044.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRRKVKHEL ISNESARKVT FRKRKAGLLK KLDELATLCG VIACAIIFSA YDDQPEIWPS  60
PAEALFAFEE LKRLPSRKPG KYMVDQEAFL STNVSKLNQQ LEKQRRKNLG LELELMMAGC  120
KEGMDLHDLK RIKNPSESIQ FLEEMIASVT SEIEHAENEN NA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKHELISNESARKVTFRKRK
2101107EKQRRKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G107600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376234.11e-117agamous-like MADS-box protein AGL80
TrEMBLB9MWC81e-115B9MWC8_POPTR; M-type family protein
STRINGPOPTR_0013s11210.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-35AGAMOUS-like 87