PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G108900.2
Common NamePOPTR_0013s11330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 255aa    MW: 28881.6 Da    PI: 8.5078
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G108900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.41.3e-3149105259
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         + v+YkeC++NhAas+Ggha DGCgEfmp  g++gt + l+CaACgCHRnFHRre+++
  Potri.013G108900.2  49 NVVKYKECMRNHAASIGGHANDGCGEFMPR-GDDGTRDWLTCAACGCHRNFHRRESST 105
                         5799*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1851105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2951103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-2752102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5453102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.5E-31155227IPR009057Homeodomain-like
SuperFamilySSF466898.52E-20159227IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-26167223IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDLSVVPYQQ QHHHKSETVH DQDVDIVLHT KPITTMISNP KATKDPCKNV VKYKECMRNH  60
AASIGGHAND GCGEFMPRGD DGTRDWLTCA ACGCHRNFHR RESSTKRQHQ QQLLLSPPPL  120
QPQQFLLYGA PTTKNMNPVH DFMSRPHDED DDDDGFMVKS TSGSSNKRFR TKFTQEQKER  180
MLEFAEKIGW RIQKHDDMAL NQFCNEVGIK RNVLKVWMHN NKNAHRRRDG VPPVSAEAPP  240
PPLPPSAPPQ PVGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-281652241675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.66371e-171bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G108900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376248.11e-153zinc-finger homeodomain protein 2
SwissprotQ9SB617e-60ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLU5FSR81e-152U5FSR8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11330.11e-152(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-58homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]