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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.013G114900.1 |
| Common Name | POPTR_0013s11930g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 464aa MW: 52448.7 Da PI: 6.521 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.013G114900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 310.7 | 3.2e-95 | 83 | 460 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l++lLl A+a ++++ a + L++l + +s +gd++qR++ayf+ +Laarl+ + s y+ + ++ts +ee+ a++ ++ vsP++
Potri.013G114900.1 83 LIHLLLITATAADENNVGSALENLTELYQSVSFTGDSVQRVVAYFADGLAARLLTKKSPFYDMIMKEPTS----EEEFLAFTDLYRVSPYY 169
689**********************************************************998888875....788889999******** PP
GRAS 92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gv 174
+++h+taNqaIlea e+e +++H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ s+eel+et++rL +fA+ + ++
Potri.013G114900.1 170 QLAHFTANQAILEAYEKEednnnSALHVIDFDVSYGFQWPSLIQSLSEKAssGNRISLRITGFGK----SAEELQETESRLVSFAKGFrNL 256
****************9988877889**********************99745556*********....9****************9758* PP
GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
fef+ l l +l +Lr k++E++aVnlv++l +l +s+++++ +Lk ++sl+P +vv++eqe +++ sFl rf+e+l+y++
Potri.013G114900.1 257 VFEFQGL----LRGSKLINLRKKKNETVAVNLVFHLNTLN-DSLKISD----TLKSIRSLNPSIVVLAEQEGSRSPRSFLSRFMESLHYFA 338
******8....666677899****************9995.8888888....*************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksd 347
a+fdsl+ lp es+er ++E+ lg+ei++++ +++ r ++e+W+ r+e GF ++ls+k qaklll+ + +d
Potri.013G114900.1 339 AMFDSLDDFLPLESSERLSIEKNHLGKEIKSMLNYDKDDaNCPRYDKMETWKGRMEGHGFAGMKLSSKSLIQAKLLLKirthycplQ--FD 427
**********************************999885789*********************************98333322221..22 PP
GRAS 348 g.....yrveee.sgslv.lgWkdrpLvsvSaW 373
g ++v e+ +g ++ lgW+dr L+++SaW
Potri.013G114900.1 428 GesgggFKVFERdDGKAIsLGWQDRCLITASAW 460
2333447776543777778************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MEDIEEEELL NLSLATVTDS SGGDMKRKRK RSRADHVFNP LMNSYEGCSE AKIYRLLQMR 60
EQMIKLDHKK KAAVEETGKG LHLIHLLLIT ATAADENNVG SALENLTELY QSVSFTGDSV 120
QRVVAYFADG LAARLLTKKS PFYDMIMKEP TSEEEFLAFT DLYRVSPYYQ LAHFTANQAI 180
LEAYEKEEDN NNSALHVIDF DVSYGFQWPS LIQSLSEKAS SGNRISLRIT GFGKSAEELQ 240
ETESRLVSFA KGFRNLVFEF QGLLRGSKLI NLRKKKNETV AVNLVFHLNT LNDSLKISDT 300
LKSIRSLNPS IVVLAEQEGS RSPRSFLSRF MESLHYFAAM FDSLDDFLPL ESSERLSIEK 360
NHLGKEIKSM LNYDKDDANC PRYDKMETWK GRMEGHGFAG MKLSSKSLIQ AKLLLKIRTH 420
YCPLQFDGES GGGFKVFERD DGKAISLGWQ DRCLITASAW HCV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213423 | 0.0 | AC213423.1 Populus trichocarpa clone POP042-P09, complete sequence. |
