PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.013G123100.2

Common Name

POPTR_0013s12690g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

VOZ

Protein Properties

Length: 439aa MW: 48968.4 Da PI: 5.6896

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.013G123100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	439	6e-135	202	418	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaf+gpkcalwdctrpaq +ewl+dycssfhatlalneg+pg++pvlrp+gi+lkd+llf+al ak+qgk+vgip+cegaa +kspwn Potri.013G123100.2 202 PPPSAFMGPKCALWDCTRPAQVAEWLEDYCSSFHATLALNEGPPGMAPVLRPRGINLKDNLLFDALIAKMQGKNVGIPQCEGAAVMKSPWN 292 89*************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 aaelfdlsll+getirewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmke+gg+k+syymdpqp++++ewhl+eyein++d +al Potri.013G123100.2 293 AAELFDLSLLDGETIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKELGGQKKSYYMDPQPPGCHEWHLFEYEINKCDLCAL 383 *************************************************************************************** PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelkl+++k+s+kgkvskd+ladlqkk+grlta Potri.013G123100.2 384 YRLELKLTNGKRSPKGKVSKDPLADLQKKMGRLTA 418 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MQKGKKSKCT SVSHHLLMDN AKTRLNDLHE RFSNLQAARK EGWNSDVAVL EEQVYQGLRE 60 WKAELDVPSP ANSLLDISLG SFSDDIGRLL QLYEEEDDAT SPLTMQLVLK PEMQPEPNFQ 120 NLNPGNLTTF QHGLGFQGFH QPNSSASGLQ NVVVSAPDIT TLLDCQQFTL DEEFDPGLFG 180 GTNDIEECGK NAESNNLQYI SPPPSAFMGP KCALWDCTRP AQVAEWLEDY CSSFHATLAL 240 NEGPPGMAPV LRPRGINLKD NLLFDALIAK MQGKNVGIPQ CEGAAVMKSP WNAAELFDLS 300 LLDGETIREW LFFDKPRRAF DSGNRKQRSL PDYNGRGWHE SRKQVMKELG GQKKSYYMDP 360 QPPGCHEWHL FEYEINKCDL CALYRLELKL TNGKRSPKGK VSKDPLADLQ KKMGRLTAVV 420 TADNGPPLKG KTKADREN*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MQKGKKSKCT SVSHHLLMDN AKTRLNDLHE RFSNLQAARK EGWNSDVAVL EEQVYQGLRE  60
WKAELDVPSP ANSLLDISLG SFSDDIGRLL QLYEEEDDAT SPLTMQLVLK PEMQPEPNFQ  120
NLNPGNLTTF QHGLGFQGFH QPNSSASGLQ NVVVSAPDIT TLLDCQQFTL DEEFDPGLFG  180
GTNDIEECGK NAESNNLQYI SPPPSAFMGP KCALWDCTRP AQVAEWLEDY CSSFHATLAL  240
NEGPPGMAPV LRPRGINLKD NLLFDALIAK MQGKNVGIPQ CEGAAVMKSP WNAAELFDLS  300
LLDGETIREW LFFDKPRRAF DSGNRKQRSL PDYNGRGWHE SRKQVMKELG GQKKSYYMDP  360
QPPGCHEWHL FEYEINKCDL CALYRLELKL TNGKRSPKGK VSKDPLADLQ KKMGRLTAVV  420
TADNGPPLKG KTKADREN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.013G123100.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213156	0.0	AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438833.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-167	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2K1Y4Q3	0.0	A0A2K1Y4Q3_POPTR; Uncharacterized protein
STRING	POPTR_0013s12690.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-169	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.013G123100.2
Entrez Gene	18104553

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]